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last update: 09 June 2022

Yacobi Y.Z., U. Pollingher, Y. Gonen, V. Gerhardt & A. Sukenik (1996) HPLC analysis of phytoplankton pigments from Lake Kinnereth with special reference to the bloom-forming dinoflagellate Peridinium gatunense (Dinophyceae) and chlorophyll degredation products. - Journal of Plankton Research 18(10): 1781-1796.
Yacobi Y.Z. (2001) Seasonal variation of pigmentation of Peridinium gatunense (Dinophyceae). - Journal of Phycology 37(3) Suppl.: 55.

Yamada N., R. Terada, A. Tanaka & T. Horiguchi (2013) Bispinodinium angelaceum gen. et sp. nov. (Dinophyceae), a new sand-dwelling dinoflagellate from the seafloor off Mageshima Island, Japan. - Journal of Phycology 49(3): 555-569.
Yamada N., A. Tanaka & T. Horiguchi (2014) cPPB-E is discovered from photosynthetic benthic dinoflagellates. - Journal of Phycology 50(1): 101-107. 
Yamada N., A. Tanaka & T. Horiguchi (2015) Pigment compositions are linked to the habitat types in dinoflagellates. - Journal of Plant Research 128(6): 923-932.

Yamada N., S.D. Sym & T. Horiguchi (2017) Identification of highly divergent diatom-derived chloroplasts in dinoflagellates, including a description of Durinskia kwazulunatalensis sp. nov. (Peridiniales, Dinophyceae). - Molecular Biology and Evolution 34(6): 1335-1351.
Yamada N., M. Dawut, R. Terada & T. Horiguchi (2019) Plagiodinium ballux sp. nov. (Dinophyceae), a deep (36 m) sand dwelling dinoflagellate from subtropical Japan. - Phycological Research 67: 12-20.

Yamada N., J.J. Bolton, R. Trobajo, D.G. Mann, P. Dabek, A. Witkowski, R. Onuma, T. Horiguchi & P.G. Kroth (2019) Discovery of a kleptoplastic 'dinotom' dinoflagellate and the unique nuclear dynamics of converting kleptoplastids to permanent plastids. - Scientific Reports 9: 10474.
Yamada N., H. Sakai, R. Onuma, P.G. Kroth & T. Horiguchi (2020) Five non-motile dinotom dinoflagellates of the genus Dinothrix. - Frontiers in Plant Science 11: 591050.

Yamaguchi A. & T. Horiguchi (2005) Molecular phylogenetic study of the heterotrophic dinoflagellate genus Protoperidinium (Dinophyceae) inferred from small subunit rRNA gene sequences. – Phycological Research 53: 30-42.
Yamaguchi A. & T. Horiguchi (2008) Culture of the heterotrophic dinoflagellate Protoperidinium crassipes (Dinophyceae) with noncellular food items. - Journal of Phycology 44(4): 1090-1092.
Yamaguchi A., H. Kawamura & T. Horiguchi (2006) A further phylogenetic study of the heterotrophic dinoflagellate genus, Protoperidinium (Dinophyceae) based on small and large subunit ribosomal RNA gene sequences. - Phycological Research 54: 317-329.
Yamaguchi A., H. Kawamura & T. Horiguchi (2007) The phylogenetic position of an unusual Protoperidinium species, P. bipes (Peridiniales, Dinophyceae), based on small and large subunit ribosomal RNA gene sequences. - Phycologia 46(3): 270-276.
Yamaguchi A., M. Hoppenrath, V. Pospelova, T. Horiguchi & B.S. Leander (2011) Molecular phylogeny of the marine sand-dwelling dinoflagellate Herdmania litoralis and an emended description of the closely related planktonic genus Archaeperidinium Jörgensen. - European Journal of Phycology 46: 98-112.
Yamaguchi A., S. Yoshimatsu, M. Hoppenrath, K.C. Wakeman & H. Kawai (2016) Molecular phylogeny of the benthic dinoflagellate genus Amphidiniopsis and its relationships with the family Protoperidiniaceae. - Protist 167(6): 568-583.  

Yamaguchi A., K.C. Wakeman, M. Hoppenrath, T. Horiguchi & H. Kawai (2018) Molecular phylogeny of the benthic dinoflagellate Cabra matta (Dinophyceae) from Okinawa, Japan. - Phycologia 57(6): 630-640.
Yamaguchi H., T. Nakayama, A. Kai & I. Inouye (2011) Taxonomy and phylogeny of a new kleptoplastidal dinoflagellate, Gymnodinium myriopyrenoides sp. nov. (Gymnodiniales, Dinophyceae), and its cryptophyte symbiont. - Protist 162(4): 650-667.
Yamaguchi H., T. Yoshimatsu, Y. Tanimoto, S. Sato, T. Nishimura, K. Uehara & M. Adachi (2012) Effects of temperature, salinity and their interaction on growth of the benthic dinoflagellate Ostreopsis cf. ovata (Dinophyceae) from Japanese coastal waters. - Phycological Research 60(4): 297-304.
Yamaguchi M., S. Itakura & I. Imai (1995) Vertical and horizontal distribution and abundance of resting cysts of the toxic dinoflagellate Alexandriums tamarense and Alexandrium catenella in sediments of Hiroshima Bay, the Seto Inland Sea, Japan. – Nippon Suisan Gakk. 61: 700-706.
Yamaguchi M., S. Itakura, I. Imai & Y. Ishida (1995) A rapid and precise technique for enumeration of resting cysts of Alexandrium spp. (Dinophyceae) in natural sediments. - Phycologia 34(3): 207-214.

Yamamoto M., K.C. Wakeman, S. Tomioka & T. Horiguchi (2020) Molecular phylogeny and ultrastructure of two novel parasitic dinoflagellates, Haplozoon gracile sp. nov. and H. pugnus sp. nov. - Phycologia 59(4): 305-319.
Yamamoto T., T. Hashimoto, K. Tarutani & Y. Kotani (2002) Effects of winds, tides and river runoff on the formation and disappearance of the Alexandrium tamarense bloom in Hiroshima Bay, Japan. - Harmful Algae 1(3): 301-312.
Yamamoto T. & K. Tarutani (1999) Growth and phosphate uptake kinetics of the toxic dinoflagellate Alexandrium tamarense from Hiroshima Bay in the Seto Inland Sea, Japan. - Phycological Research 47: 27-32.

Yamashita H. & K. Koike (2013) Genetic identity of free-living Symbiodinium obtained over a broad latitudinal range in the Japanese coast. - Phycological Research 61(1): 68-80.

Yan T., M. Zhou, M. Fu, Y. Wang, R. Yu & J. Li (2001) Inhibition of egg hatching success and larvae survival of the scallop, Chlamys farrei, associated with exposure to cells and cell fragments of the dinoflagellate Alexandrium tamarense. - Toxicon 39: 1239-1244.

Yang I., E. Selander, H. Pavia & U. John (2011) Grazer-induced toxin formation in dinoflagellates: a transcriptomic model study. - European Journal of Phycology 46: 66-73.

Yang F., C. Long, Z. Wei & L. Long (2020) Optimization of medium using response surface methodology to enhance the growth of Effrenium voratum (Symbiodiniaceae, Dinophyceae). - Journal of Phycology 56(5): 1208-1215.
Yang F., L. Li & S. Lin (2020) Methylation pattern and expression dynamics of methylase and photosystem genes under varying light intensities in Fugacium kawaguchtii (Symbiodiniaceae). - Journal of Phycology 56(6): 1738-1747.

Yang Z.B., I.J. Hodkiss & G. Hansen (2001) Karenia longicanalis sp. nov. (Dinophyceae): a new bloom-forming species isolated from Hong Kong, May 1998. - Botanica Marina 44: 67-74.
Yang Z.B., H. Takayama, K. Matsuoka & I.J. Hodgkiss (2000) Karenia digitata sp. nov. (Gymnodiniales, Dinophyceae). A new harmful algal species from the coastal waters of west Japan and Hong Kong. – Phycologia 39: 463-470.

Yasumoto T. (1990) Marine microorganism toxins: an overview. - In: Toxic Marine Phytoplankton (E. Granéli, B. Sundström, L. Edler & D.M. Anderson, Eds.) – Elsevier, New York, Amsterdam, London, pp. 3-8.
Yasumoto T. (2001) The chemistrry and biological function of natural marine toxins. – Chem. Rec. 1: 228-242.
Yasumoto T., K. Fujimoto, Y. Oshima, A. Inouye, T. Ochi, R. Adachi & Y. Fukuyo (1980) Ecological and distributional studies on a toxic dinoflagellate responsible for ciguatera. -Report to the Japanese Ministery of Education, Tokyo, 50 pp.
Yasumoto T., N. Seino, Y. Murakami & M. Murata (1987) Toxins produced by benthic dinoflagellates. – Biology Bulletin 172: 128-131.
Yasumoto T., I. Nagkajima, R. Bagnis & R. Adachi (1977) Finding of a dinoflagellate as a likely culprit of ciguatera. – Nippon Susan Gakk. 43: 1021-1026.
Yasumoto T., Y. Oshima, W. Sugawara, Y. Fukuyo, H. Oguri, T. Igarashi & N. Fujita (1980) Toxicity of benthic dinoflagellates found in coral reef. – Bull. Japan Soc. Sci. Fish. 46: 327-331.
Yasumoto T., B. Underdahl, T. Aune, V. Hormazabal & O.M. Skullberg (1990) Sceening for hemolytic acticity and ichthyotoxic components of Chrysochromulina polylepis and Gyrodinium aureolum from Norwegian coastal waters. - In: Toxic Marine Phytoplankton (E. Granéli, B. Sundström, L. Edler & D.M. Anderson, Eds). – Elsevier, New York, Amsterdam, London, pp.  436-440.

Yeung P.K.K., K.F. Kong, F.T.W. Wong & J.T.Y. Wong (1996) Sequence data for two large-subunit rRNA genes from Asian strains of Alexandrium catenella. - Applied and Environmental Microbiology 62(11): 4199-4201.

Yih W. & D.W. Coats (2000) Infection of Gymnodinium sanguineum by the dinoflagellate Amoebophrya sp.: effect of nutrient environment on parasite generation time, reproduction, and infectivity. - The Journal of Eukaryotic Microbiology 47(5): 504-510.

Yokouchi K., R. Onuma & T. Horiguchi (2018) Ultrastructure and phylogeny of a new species of mixotrophic dinoflagellate, Paragymnodinium stigmaticum sp. nov. (Gymnodiniales, Dinophyceae). - Phycologia 57(5): 539-554.
Yokouchi K., K.Takahashi, V.N. Nguyen, M. Iwataki & T. Horiguchi (2020) Ultrastructure and systematics of two new species of dinoflagellate, Paragymnodinium asymmetricum sp. nov. and Paragymnodinium inerme sp. nov. (Gymnodiniales, Dinophyceae). - Journal of Phycology 56: 730-746.
Yokouchi K. & T. Horiguchi (2021) Paragymnodinium verecundum sp. nov. (Gymnodiniales, Dinophyceae), a new species of mixotrophic dinoflagellate from Japan. - Phycological REsearch 69: 124-136.

Yokoyama A., F. Takahashi, H. Kataoka, Y. Hara & H. Nozaki (2011) Evolutionary analyses of the nuclear-encoded photosynthetic gene psbO from tertiary plastid-containing algae in Dinophyta. - J. Phycol. 47(2): 407-414.

Yoo J.S., J.H. Lee & Y. Fukuyo (2004) Prorocentrum vietnamensis sp. nov. (Prorocentraceae Dinophyta): a new armored dinoflagellate from Vietnam coastal waters. - Journal of Plant Biology 47(2): 129-132.
Yoo K.I. & J.B. Lee (1986) Taxonomical studies on dinoflagellates in Masan Bay 1. Genus Prorocentrum Ehrenberg. - J. Oceanol. Soc. Korea 21: 46-55.
Yoo Y.D., H.J. Jeong, M.S. Kim, N.S. Kang, J.Y. Song, W. Shin, K.Y. Kim & K. Lee (2009) Feeding by phototrophic red-tide dinoflagellates on the ubiquitous marine diatom Skeletonema costatum. - Journal of Eukaryotic Microbiology 56(5): 413-420.
Yoo Y.D., H.J. Jeong, N.S. Kang, J.Y. Song, K.Y. Kim, G. Lee & J.H. Kim (2010) Feeding by the newly described mixotrophic dinoflagellate Paragymnodinium shiwhaense: feeding mechanism, prey species, and effect of prey concentration. - Journal of Eukaryotic Microbiology 57(2): 145-158.
Yoo Y.D., E.Y. Yoon, H.J. Jeong, K.H. Lee, Y.J. Hwang, K.A. Seong, J.S. Kim & J.Y. Park (2013) The newly described heterotrophic dinoflagellate Gyrodinium moestrupii, an effective protistan grazer of toxic dinoflagellates. - Journal of Eukaryotic Microbiology 60: 13-24.

Yoon E.Y., N.S. Kang & H.J. Jeong (2012) Gyrodinium moestrupii n. sp., a new planktonic heterotrophic dinoflagellate from the coastal waters of western Korea: morphology and ribosomal DNA gene sequence. - Journal of Eukaryotic Microbiology 59(6): 571-586.
Yoon H.S., J.D. Hackett, F.M. Van Dolah, T. Nosenko, K.L. Lidie & D. Bhattacharya (2005) Tertiary endosymbiosis driven genome evolution in dinoflagellate algae. – Mol. Evol. Evol. 22(5): 1299-1308.

Yoshida M., T. Ogata, C. Van Thuoc, K. Matsuoka, Y. Fukuyo, N.C. Hoi & M. Kodama (2000) The first finding of toxic dinoflagellate Alexandrium minutum in Vietnam. - Fisheries Science 66: 177-179.

Yoshida M., K. Mizushima & K. Matsuoka (2003) Alexandrium acatenella (Gonyaulacales: Dinophyceae): morphological characteristics of vegetative cell and resting cyst. - Plankton Biology & Ecology 50(2): 61-64.

Yoshida T., Y. Sako & A. Uchida (2001) Geographic differences in paralytic shellfish poisoning toxin profiles among Japanese populations of Alexandrium tamarense and A. catenella (Dinophyceae). - Phycological Research 49: 13-21.

Yoshimatsu S., S. Toriumi and J.D. Dodge (2000) Light and scanning microscopy of two benthic species of Amphidiniopsis (Dinophyceae), Amphidiniopsis hexagona sp. nov. and Amphidiniopsis swedmarkii from Japan. - Phycological Research 48: 107-113.
Yoshimatsu S., S. Toriumi & J.D. Dodge (2004) Morphology and taxonomy of five marine sand-dwelling Thecadinium species (Dinophyceae) from Japan, including four new species: Thecadinium arenarium sp. nov., Thecadinium ovatum sp. nov., Thecadinium striatum sp. nov. and Thecadinium yashimaense sp. nov.. – Phycological Research 52: 211-223.

Yuasa K., T. Shikata, Y. Kuwahara & Y. Nishiyama (2018) Adverse effects of strong light and nitrogen deficiency on cell viability, photosynthesis, and motility of the red-tide dinoflagellate Karenia mikimotoi. - Phycologia 57(5): 525-533.

Yuasa T., T. Horiguchi, S. Mayama & O. Takahashi (2016) Gymnoxanthella radiolariae gen. et sp. nov. (Dinophyceae), a dinoflagellate symbiont from solitary polycystine radiolarians. - Journal of Phycology 52(1): 89-104.

Yuki K. (1994) First record of Alexandrium minutum Halim (Dinophyceae) from Japan. – Japanese Journal of Phycology (Sôrui) 42: 425-430.
Yuki K.Y. & Fukuyo (1992) Alexandrium satoanum sp. nov. (Dinophyceae) from Matoya Bay, Central Japan. -  Journal of Phycology 28(3): 396-398, figs. 1-12.